rs34189496 chr12:105331121 T>C
- Sequence
gcaagtcccccgcgcgggggcggt[T/C]gcgcctggagcagtcgagcctgcg
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) T47D (invasive ductal carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.11 | 2.63 | 1.35 | 1.08 | Weak Concordant | |||
| STAG1_HUMAN | 1.06 | 2.56 | 1.52 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Prostate, Testis