rs34196015 chr7:71220569 C>T
- Sequence
ggtgtagttcattttatctgtcag[C/T]agaggcatacttttatggtcctaa
- ASB in cell types
- K562 (myelogenous leukemia) pancreas tibial artery esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN EP300_HUMAN RING2_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.27 | -0.48 | 2.27 | n/a | No Hit | |||
| EP300_HUMAN | 1.75 | 0.17 | 1.60 | n/a | n/a | |||
| RING2_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.83 | -1.19 | 1.00 | n/a | n/a | |||
| COT1_HUMAN | 2.17 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Testis, Thyroid