rs34201245 chr17:76365517 A>C
- Sequence
cctcagaatttcctgagtgatagt[A/C]gtgtctgtgttactcacgatcggg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM19239 (male B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MS-1 (Small cell lung carcinoma) | 2.25 | 0.25 | 2.00 | |||
| GM19239 (male B-cells lymphoblastoid cell line) | -1.04 | 2.00 | 1.00 | |||
| GM02630 (Fanconi anemi) | 1.95 | 0.54 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Thyroid