rs34208552 chr8:94895839 C>G
- Sequence
cctggccaagtgcggctctgctct[C/G]cccagtcccggtccgcgaccaccc
- ASB in cell types
- K562 (myelogenous leukemia) T-cells RH4 (alveolar rhabdomyosarcoma) P493-6 (B-cell lymphoma)
- ASB for transcription factors
- RAG2_HUMAN MAX_HUMAN ZN600_HUMAN RBM25_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAG2_HUMAN | 2.90 | n/a | 1.00 | n/a | n/a | |||
| MAX_HUMAN | 1.23 | 0.00 | 1.38 | n/a | No Hit | |||
| ZN600_HUMAN | -1.64 | 1.94 | 1.00 | n/a | n/a | |||
| RBM25_HUMAN | n/a | 1.38 | 4.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood