rs34224911 chr1:43792670 A>T

Sequence
tactgtgtactcatgccaaaatgc[A/T]tgtaggtggacacactccttctct
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.45 0.07 4.1·10-41.00 2.00 n/a No Hit
FOXA1_HUMAN 1.24 -0.01 3.3·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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