rs34239095 chr15:88912537 C>G
- Sequence
acggtgaatggcacggggcatccg[C/G]aagtccagcctgcaaggggcccag
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- ZFX_HUMAN SIN3A_HUMAN SP2_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.53 | 1.42 | 1.00 | n/a | No Hit | |||
| SIN3A_HUMAN | -1.88 | 2.28 | 1.00 | n/a | n/a | |||
| SP2_HUMAN | -3.27 | 1.87 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | -1.37 | 2.40 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis