rs34248873 chr16:25258001 A>G
- Sequence
gtgactcgtcgctgagggacttta[A/G]gattgtagaggggcgcggagggtc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) MOLM14 (Adult acute myeloid leukemia) keratinocytes
- ASB for transcription factors
- RBM25_HUMAN NRF1_HUMAN SPT5H_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.38 | 1.75 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.74 | 3.33 | 2.00 | n/a | No Hit | |||
| SPT5H_HUMAN | -0.56 | 1.67 | 1.17 | n/a | n/a | |||
| IKZF1_HUMAN | 0.43 | 1.22 | 1.50 | n/a | n/a | |||
| BACH1_HUMAN | -2.56 | 2.48 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid