rs34274195 chr8:27311385 G>A
- Sequence
agcggcgctggccaatcgtgcggg[G/A]gggatggcgagggggagggagggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) liver CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- PKNX1_HUMAN BHE40_HUMAN GABP1_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | n/a | 1.50 | 1.42 | n/a | No Hit | |||
| BHE40_HUMAN | n/a | 3.37 | 1.33 | n/a | No Hit | |||
| GABP1_HUMAN | n/a | 2.30 | 1.42 | n/a | n/a | |||
| IKZF1_HUMAN | 0.04 | 2.13 | 1.40 | n/a | n/a | |||
| TEAD3_HUMAN | -2.37 | 2.76 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood