rs34275691 chr17:58659279 A>T
- Sequence
gaaaaacactttatcaggaccaac[A/T]gcgtctctcccccgccacaaagac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) MCF7 WS8 cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- JUN_HUMAN FOXA1_HUMAN BCL3_HUMAN SMAD3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.53 | 0.63 | 2.73 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.20 | 0.06 | 2.64 | n/a | No Hit | |||
| BCL3_HUMAN | 1.31 | -1.05 | 2.83 | n/a | n/a | |||
| SMAD3_HUMAN | 1.70 | -0.12 | 1.33 | n/a | No Hit | |||
| NELFE_HUMAN | 1.90 | -1.15 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood