rs34292002 chr14:20971535 G>C
- Sequence
accagcagagaaacgggccgggca[G/C]gagcccgcaccagcccggcttggg
- ASB in cell types
- A549 (lung carcinoma) glioblastoma patient-derived cell model THP-1 (acute monocytic leukemia) Kelly (neuroblastoma)
- ASB for transcription factors
- BHE40_HUMAN RAD21_HUMAN RUNX3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | n/a | 2.39 | 2.00 | 4.39 | Concordant | |||
| RAD21_HUMAN | 0.97 | 0.44 | 1.35 | n/a | n/a | |||
| RUNX3_HUMAN | 2.27 | -2.27 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood