rs343360 chr1:42214656 G>T
- Sequence
ggaaggtaagtcaaaacttgggaa[G/T]aatgtgggtgaatttcctgttttg
- ASB in cell types
- BEAS-2B (bronchial epithelium) HepG2 (hepatoblastoma) CFPAC-1(pancreatic ductal adenocarcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- GCR_HUMAN TEAD3_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.16 | -0.28 | 1.00 | n/a | No Hit | |||
| TEAD3_HUMAN | 2.81 | -2.46 | 1.00 | -4.03 | Concordant | |||
| TCF21_HUMAN | -4.65 | 2.55 | 2.00 | n/a | No Hit |
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Motif analysis
