rs34338480 chr5:6712741 T>C
- Sequence
actctgccgcgtgtccttcccggc[T/C]ccggagcggcggagccagccaccc
- ASB in cell types
- primary B-CLL cells K562 (myelogenous leukemia) HepG2 (hepatoblastoma) breast tumor
- ASB for transcription factors
- ESR1_HUMAN TYY1_HUMAN HTF4_HUMAN CDK8_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.30 | 0.06 | 2.19 | n/a | No Hit | |||
| TYY1_HUMAN | 2.07 | -3.74 | 1.50 | n/a | No Hit | |||
| HTF4_HUMAN | n/a | 2.49 | 1.00 | n/a | No Hit | |||
| CDK8_HUMAN | -1.09 | 1.80 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid