rs34384547 chr20:2402816 C>A
- Sequence
cataatcagaaccctacctacccc[C/A]tctgctggccatatcccagagata
- ASB in cell types
- epithelial cell of prostate SK-N-SH (neuroblastoma) liver K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.95 | -0.09 | 1.37 | -0.97 | Weak Concordant | |||
| RAD21_HUMAN | 2.61 | -0.24 | 1.25 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
