rs34402301 chr22:50247942 C>T
- Sequence
gggctgacgcttcctgttggatga[C/T]gtcagggggcagaaccaatgtgat
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ZN629_HUMAN SP2_HUMAN ANDR_HUMAN SP7_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN629_HUMAN | 3.50 | n/a | 2.00 | n/a | n/a | |||
| SP2_HUMAN | 2.09 | n/a | 3.00 | -1.50 | Weak Concordant | |||
| ANDR_HUMAN | 2.54 | n/a | 2.00 | n/a | No Hit | |||
| SP7_HUMAN | 2.62 | -4.84 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid