rs344137 chr4:76733659 A>G
- Sequence
cccaggtgtgtttctgaggagcac[A/G]gtggcatctagtggtccagtgtgc
- ASB in cell types
- GM10847 (female B-cells Lymphoblastoid Cell Lines) foreskin keratinocyte keratinocytes HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.67 | 0.25 | 1.96 | -0.36 | Weak Concordant | |||
| RAD21_HUMAN | 1.70 | 0.27 | 1.38 | n/a | n/a | |||
| STAG1_HUMAN | 2.46 | -3.20 | 2.87 | n/a | n/a | |||
| SNAI2_HUMAN | 2.07 | -1.05 | 1.50 | n/a | No Hit |
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Motif analysis
