rs34428611 chr5:159916237 C>G
- Sequence
agagtgactagcggggaaaataac[C/G]ccagcgggccgcctaggggtgggt
- ASB in cell types
- A549 (lung carcinoma) Peyer's patch
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.42 | 1.22 | 1.55 | n/a | n/a | |||
| SMC3_HUMAN | 0.19 | 1.39 | 1.92 | n/a | n/a | |||
| CTCF_HUMAN | 0.48 | 0.89 | 1.26 | 0.91 | Weak Concordant |
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Motif analysis
