rs34437200 chr16:11297853 G>A
- Sequence
cagcttcttgcatgtgccctcccc[G/A]gggaatgtctgcagagcccaagac
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) breast tumor 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.41 | -1.58 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.90 | 0.35 | 3.67 | n/a | No Hit | |||
| ETS1_HUMAN | 1.72 | -1.23 | 1.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Spleen, Testis, Thyroid