rs34449206 chr4:153222954 C>G

Sequence
tagggcacctcggccctggctggg[C/G]gcgcagcgaggcccaggcccgagg
ASB in cell types
HCT-116 (colon carcinoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ZFX_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN 2.71 -3.30 3.8·10-71.00 1.60 n/a No Hit
ESR1_HUMAN 1.18 0.72 0.021.00 1.85 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary

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