rs34455584 chr3:180912403 A>G
- Sequence
cgaactgcgggcactgtggggcgg[A/G]gacctaggggcgggtcaacaaagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) neural cell EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN TBX21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.47 | 0.95 | 1.55 | -0.39 | Weak Concordant | |||
| FOXK2_HUMAN | 4.13 | -0.77 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 2.03 | -1.01 | 1.00 | n/a | No Hit | |||
| SMC3_HUMAN | 2.56 | -2.18 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.64 | -0.65 | 2.00 | n/a | No Hit |
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Motif analysis
