rs344589 chr19:6590778 A>G

Sequence
ctctggcctctttgtacccatctc[A/G]ttctgtcttttcggtcacgcgcct
ASB in cell types
monocytes from periferal blood GM23248
ASB for transcription factors
SRBP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 2.34 n/a 1.0·10-21.00 2.50 -4.64 Concordant
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Motif analysis

SRBP2_HUMAN Concordant
SRBP2_HUMAN pic

Genetic associations

GRASP college completion,  eye color,  ldl cholesterol,  non-hodgkin lymphoma (diffuse large b-cell lymphoma),  partial epilepsy,  premature ovarian failure,  spine bone mineral density (bmd),  sporadic creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts

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