rs34464091 chr17:35942838 T>G

Sequence
tagggaagctaaaagcagaatcga[T/G]gggtatgcctacagctgcaagatg
ASB in cell types
K562 (myelogenous leukemia) embryonic stem cells derived definitive endoderm
ASB for transcription factors
SOX6_HUMAN GATA4_HUMAN GATA6_HUMAN SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX6_HUMAN 2.42 n/a 1.0·10-31.00 2.00 n/a No Hit
GATA4_HUMAN 2.38 -2.04 3.6·10-31.00 1.00 n/a No Hit
GATA6_HUMAN 1.32 -0.71 8.5·10-31.00 1.00 n/a No Hit
SMCA4_HUMAN 2.06 -4.28 0.021.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Whole_Blood

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