rs34466559 chr8:18084285 A>C

Sequence
gaaagagagagagccttccaggct[A/C]cctgcagaaggagagtcgcgatcg
ASB in cell types
K562 (myelogenous leukemia) primary B-CLL cells breast tumor monocytes from periferal blood
ASB for transcription factors
BRD4_HUMAN LEF1_HUMAN ESR1_HUMAN SRBP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 2.24 0.07 1.5·10-30.85 2.25 n/a n/a
LEF1_HUMAN n/a 2.98 1.002.5·10-3 2.00 n/a No Hit
ESR1_HUMAN 2.74 -4.97 3.1·10-31.00 2.00 n/a No Hit
SRBP2_HUMAN 2.49 n/a 0.011.00 2.50 n/a No Hit
SPT5H_HUMAN -1.83 2.78 1.000.02 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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