rs34469290 chr15:75758479 T>C
- Sequence
ccctccagcacctcctgcgggctg[T/C]ggtccgcttccggcctcactcgag
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) 2588 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN ELF1_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 1.72 | 1.33 | n/a | No Hit | |||
| JUN_HUMAN | 2.58 | -0.44 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | 2.28 | -0.81 | 2.33 | n/a | No Hit | |||
| BCL3_HUMAN | 1.91 | -1.09 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.10 | -0.57 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood