rs34497506 chr10:86400837 C>T
- Sequence
gagcagggagttggagacgcagct[C/T]ggccgagctttccttcgcccaccc
- ASB in cell types
- RCH-ACV (B acute lymphoblastic leukemia with t(1;19)(q23;p13.3) E2A-PBX1 (TCF3-PBX1)) HCT-116 (colon carcinoma)
- ASB for transcription factors
- KMT2A_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 1.73 | -0.15 | 1.00 | -2.08 | Concordant | |||
| CTCF_HUMAN | 0.80 | 1.19 | 1.21 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Nucleus_accumbens_basal_ganglia, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid