rs34501388 chr2:65169496 G>A
- Sequence
gtttctgcacgcccccttctggct[G/A]agtaagcgctcatcgctaaatgat
- ASB in cell types
- foreskin keratinocyte esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.10 | 0.29 | 1.31 | 0.42 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg