rs34520143 chr6:142947813 C>G
- Sequence
agtttcaaatttcgcggaaaggga[C/G]caaatgtgaggacatataaaatat
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- TF65_HUMAN ANDR_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 1.83 | -0.82 | 2.56 | n/a | No Hit | |||
| ANDR_HUMAN | 2.68 | -4.96 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.62 | 0.45 | 1.50 | 0.21 | Weak Discordant |
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Motif analysis
