rs34521372 chr19:47518383 G>C

Sequence
cctggattaccacaagcggttttg[G/C]ttccatgtctgtcaaagcaacact
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) germinal center CD77+ B cells
ASB for transcription factors
RAD51_HUMAN SKIL_HUMAN PKNX1_HUMAN BACH1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD51_HUMAN 3.06 -2.75 1.1·10-41.00 1.00 n/a n/a
SKIL_HUMAN 2.05 -2.05 1.7·10-41.00 1.00 n/a n/a
PKNX1_HUMAN 1.28 0.81 2.6·10-41.00 1.50 n/a No Hit
BACH1_HUMAN 3.03 -2.69 3.4·10-41.00 1.00 n/a No Hit
SRF_HUMAN 2.42 -1.96 0.011.00 1.00 0.67 Weak Discordant
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Motif analysis

SRF_HUMAN Weak Discordant
SRF_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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