rs34532264 chr2:172514036 G>A
- Sequence
ggaggaaccgtcacctatcttatc[G/A]cctcctcttccctcagccctgata
- ASB in cell types
- K562 (myelogenous leukemia) TF-1 (erythroleukemia)
- ASB for transcription factors
- GATA2_HUMAN SMC3_HUMAN TIF1A_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA2_HUMAN | 1.87 | -3.05 | 1.50 | 2.86 | Discordant | |||
| SMC3_HUMAN | 1.91 | -1.48 | 1.50 | n/a | n/a | |||
| TIF1A_HUMAN | 1.61 | -1.52 | 1.25 | n/a | n/a | |||
| NCOR1_HUMAN | 1.80 | -0.68 | 1.00 | n/a | n/a | |||
| ZEB2_HUMAN | -1.38 | 1.86 | 1.00 | 4.35 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Cells_EBV-transformed_lymphocytes, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Whole_Blood