rs34533431 chr14:32203275 G>A
- Sequence
gtgctgccgaagcgagcacgttga[G/A]aagaagtcacccacaggccttata
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma) primary B-CLL cells Kelly (neuroblastoma)
- ASB for transcription factors
- TBP_HUMAN ATF3_HUMAN SUZ12_HUMAN MYCN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | -0.20 | 0.30 | 1.00 | n/a | No Hit | |||
| ATF3_HUMAN | 2.48 | -1.59 | 1.33 | -0.81 | Weak Concordant | |||
| SUZ12_HUMAN | 2.00 | -1.82 | 1.00 | n/a | n/a | |||
| MYCN_HUMAN | 2.11 | -0.56 | 1.20 | -0.86 | Weak Concordant | |||
| STAT1_HUMAN | 1.85 | -1.25 | 1.00 | n/a | No Hit |
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Motif analysis
