rs34541954 chr7:101322040 T>C

Sequence
tccaacttttgggctcaaacgatc[T/C]ttctgcctcagcctcccgagtagc
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney) LNCaP C4-2 (prostate carcinoma) primary B-CLL cells
ASB for transcription factors
LMBL2_HUMAN RFX1_HUMAN PHF20_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
LMBL2_HUMAN 3.16 -2.81 9.2·10-61.00 1.00 n/a n/a
RFX1_HUMAN 0.99 0.54 1.0·10-41.00 1.38 n/a No Hit
PHF20_HUMAN 3.07 -2.73 1.9·10-41.00 1.00 n/a n/a
BRD4_HUMAN 1.76 -0.03 3.2·10-41.00 1.67 n/a n/a
SPT5H_HUMAN 2.87 -1.84 1.2·10-31.00 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Thyroid

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