rs34551701 chr2:177262312 A>C

Sequence
atccctcatctaggaaagtgcttt[A/C]tctctccaagacacccttgaaaag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ARI1B_HUMAN ZEB2_HUMAN KDM1A_HUMAN NCOR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN 3.29 -3.08 3.7·10-121.00 1.00 n/a n/a
ZEB2_HUMAN 2.97 -0.91 3.8·10-41.00 1.00 n/a No Hit
KDM1A_HUMAN 2.10 -1.75 8.6·10-41.00 1.00 n/a n/a
NCOR1_HUMAN 2.43 -0.35 1.8·10-31.00 1.17 n/a n/a
TAL1_HUMAN 3.03 -5.36 2.5·10-31.00 2.00 4.35 Discordant
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Motif analysis

TAL1_HUMAN Discordant
TAL1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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