rs34554438 chr1:241542473 T>C
- Sequence
caaagtcttgtacacacaaacagg[T/C]tagactggttattcataaaaatgt
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes bronchial epithelial cells
- ASB for transcription factors
- FOXA1_HUMAN PRGR_HUMAN GRHL2_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.55 | 0.37 | 2.29 | n/a | No Hit | |||
| PRGR_HUMAN | 1.99 | -0.48 | 1.44 | n/a | No Hit | |||
| GRHL2_HUMAN | 1.21 | 0.23 | 1.88 | -0.41 | Weak Concordant | |||
| STAT1_HUMAN | 2.43 | -5.12 | 2.00 | n/a | No Hit |
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Motif analysis
