rs34568117 chr18:77054848 C>G
- Sequence
tcctgttagcggtgggtaatgtca[C/G]catgcacacatcctgttttctcct
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) HEK293 (embryonic kidney) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- JUN_HUMAN SMRC1_HUMAN JUND_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.23 | 2.69 | 1.22 | -0.77 | Weak Discordant | |||
| SMRC1_HUMAN | 2.73 | -2.47 | 1.00 | n/a | n/a | |||
| JUND_HUMAN | 0.70 | 1.95 | 1.21 | n/a | No Hit |
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Motif analysis
