rs34570710 chr3:75552321 C>A
- Sequence
gatcctacagcaccacctagtgga[C/A]aagatggtgcactgcatgagacca
- ASB in cell types
- epithelial cell of prostate GM19240 (B cells Lymphoblastoid Cell Lines) GM18486 (Lymphoblastoid Cell Lines) bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.01 | -0.24 | 2.04 | -1.39 | Weak Concordant | |||
| STAG1_HUMAN | 3.50 | -4.57 | 2.77 | n/a | n/a | |||
| RAD21_HUMAN | 2.49 | -0.84 | 2.25 | n/a | n/a | |||
| FOXA2_HUMAN | 3.50 | n/a | 1.33 | n/a | No Hit | |||
| FOXP1_HUMAN | 3.27 | -3.61 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid