rs34592417 chr5:111461561 C>G
- Sequence
ccaactgtgggcactgctgccgcc[C/G]ataggcagctgcctcaagtgcatt
- ASB in cell types
- Kelly (neuroblastoma) HeLa (cervical adenocarcinoma) WA09 (embryonic stem cells) RWPE2
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.64 | -0.32 | 1.65 | -0.55 | Weak Concordant | |||
| RAD21_HUMAN | 1.71 | -0.71 | 1.26 | n/a | n/a | |||
| STAG1_HUMAN | 1.22 | -0.77 | 3.47 | n/a | n/a | |||
| SMCA5_HUMAN | 2.82 | n/a | 1.00 | n/a | n/a | |||
| PMEPA_HUMAN | 2.88 | -5.39 | 2.00 | n/a | n/a |
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Motif analysis
