rs34595700 chr4:68506398 C>A

Sequence
ttaagaaagaaacataaagtcaaa[C/A]gttttgtgaatattatgtcaaaat
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN GATA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.27 -0.34 2.7·10-31.00 1.62 -0.61 Weak Concordant
GATA3_HUMAN 2.24 -1.91 0.021.00 2.00 n/a No Hit
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

GTEx eQTL Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Lung,  Minor_Salivary_Gland,  Pancreas,  Prostate,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Whole_Blood

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