rs34598432 chr1:109085335 G>C
- Sequence
agataacatcagttgctaagtcac[G/C]ggtcgaattttaactaccaggctt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN NR2C1_HUMAN MITF_HUMAN EMSY_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.82 | -3.81 | 1.00 | -2.28 | Concordant | |||
| NR2C1_HUMAN | 2.41 | -2.25 | 1.00 | -1.84 | Weak Concordant | |||
| MITF_HUMAN | 3.21 | -3.55 | 1.00 | -3.26 | Concordant | |||
| EMSY_HUMAN | -1.32 | 1.60 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid