rs34598791 chr5:60844259 G>T
- Sequence
cctcacagcggcccccgctgtccc[G/T]gccgccgactgggttggaaagggg
- ASB in cell types
- HepG2 (hepatoblastoma) foreskin keratinocyte esophagus squamous epithelium 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.76 | 0.90 | 1.27 | n/a | No Hit | |||
| TYY1_HUMAN | 3.47 | n/a | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.67 | -0.81 | 2.00 | 0.99 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood