rs34651 chr5:72848178 C>T

Sequence
ccgcggcggcagcagcagcagacg[C/T]tggcggccgggctgccaggagcag
ASB in cell types
HepG2 (hepatoblastoma) primary B-CLL cells A549 (lung carcinoma)
ASB for transcription factors
BRD4_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 0.06 1.99 0.860.03 1.33 n/a n/a
JUN_HUMAN 1.22 0.08 0.031.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI chronic obstructive pulmonary disease,  height,  mean platelet volume,  red cell distribution width
GRASP fasting insulin,  height,  homa-b,  homa-ir,  ldl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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