rs346524 chr19:43756420 T>C

Sequence
aatgggtgagagtgcatagaacag[T/C]gcctgttgcctaatggtactgtgt
ASB in cell types
SUM159PT (Triple negative breast cancer) HT29 (colon adenocarcinoma)
ASB for transcription factors
CEBPB_HUMAN PPARG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN -0.35 1.69 1.001.1·10-4 1.89 n/a No Hit
PPARG_HUMAN -3.80 2.34 1.001.4·10-3 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP parkinsons disease,  salmonella-induced pyroptosis,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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