rs346527 chr19:43755209 A>G
- Sequence
gttggcgggatgcagtggggtggg[A/G]cgacagggaggaatttcactgttc
- ASB in cell types
- BEAS-2B (bronchial epithelium) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- GCR_HUMAN INT11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.13 | 1.27 | 1.06 | n/a | No Hit | |||
| INT11_HUMAN | 1.56 | 0.03 | 1.40 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP homa-b, ldl cholesterol, parkinsons disease, salmonella-induced pyroptosis, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood