rs34717 chr19:29873739 C>T
- Sequence
cctggccaggctggtgctcagacc[C/T]ccacccagcgcccccgcgcccccg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) neural cell D54 (H54, Human glioblastoma)
- ASB for transcription factors
- CTCF_HUMAN RARA_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 0.94 | 1.33 | 1.08 | Weak Concordant | |||
| RARA_HUMAN | 1.67 | -0.16 | 1.31 | n/a | No Hit | |||
| REST_HUMAN | n/a | 2.00 | 2.00 | -2.22 | Discordant |
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Motif analysis
