rs348290 chr20:49188552 T>C
- Sequence
tcccgcctggaccgcagcggcccg[T/C]cctgagtcccggggcctgccggga
- ASB in cell types
- T47D (invasive ductal carcinoma) adult erythroblasts ER+ breast tumor SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive)
- ASB for transcription factors
- RBBP5_HUMAN E2F1_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.87 | -2.94 | 1.00 | n/a | n/a | |||
| E2F1_HUMAN | 0.09 | 1.47 | 1.40 | n/a | No Hit | |||
| RBM25_HUMAN | 0.00 | 2.38 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Testis, Thyroid, Whole_Blood