rs34876489 chr8:27772714 G>C
- Sequence
gggcgccatttttaatcctggcga[G/C]gcgaagtgtagtggcaaggagttt
- ASB in cell types
- K562 (myelogenous leukemia) adult erythroblasts HCT-116 (colon carcinoma) lymphoblastoid cells
- ASB for transcription factors
- TYY1_HUMAN HCFC1_HUMAN THAP1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.84 | 0.47 | 1.38 | 1.74 | Weak Discordant | |||
| HCFC1_HUMAN | 2.09 | -0.35 | 1.83 | n/a | n/a | |||
| THAP1_HUMAN | 3.11 | n/a | 2.00 | 1.43 | Weak Discordant | |||
| CTCF_HUMAN | 0.37 | 1.25 | 1.16 | n/a | No Hit | |||
| EHMT2_HUMAN | 1.88 | -2.24 | 1.75 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Stomach, Testis, Thyroid, Whole_Blood