rs348943 chr5:113488301 C>T

Sequence
cgtctggaagaggcgccgcatcct[C/T]tcctcctcgccggtgctggacgtg
ASB in cell types
SMMC-7721 (hepatocellular carcinoma)
ASB for transcription factors
CATA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CATA_HUMAN -1.86 2.66 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol change with statins,  triglycerides change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Vagina,  Whole_Blood

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