rs350825 chr19:4140566 T>G
- Sequence
gagctaggacgcaggtccagcctc[T/G]tatccggagtcctcctcgtatccc
- ASB in cell types
- K562 (myelogenous leukemia) GSC23 (Glioblastoma) GM18505 (female B-cells Lymphoblastoid Cell Lines) D54 (H54, Human glioblastoma)
- ASB for transcription factors
- CTCF_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.88 | 1.33 | n/a | No Hit | |||
| ETV5_HUMAN | -2.52 | 2.62 | 1.00 | 1.26 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP fasting blood glucose, hdl cholesterol, rheumatoid arthritis, simpson-angus scale, total cholesterol