rs351224 chr15:74194695 T>A

Sequence
tagctgtagtccagtgcctggaaa[T/A]gtccctggtacaaagtatgtgctt
ASB in cell types
L1236 (Hodgkin lymphoma)
ASB for transcription factors
NFKB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFKB1_HUMAN -2.26 3.06 1.003.9·10-3 2.00 1.21 Weak Concordant
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Motif analysis

NFKB1_HUMAN Weak Concordant
NFKB1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  ldl cholesterol,  microalbuminuria,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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