rs351292 chr5:155068703 C>A
- Sequence
ccagcccaggtagttagattggac[C/A]gtgtgtattcttcactgaaacagc
- ASB in cell types
- T47D (invasive ductal carcinoma) A1-2 (breast cancer cells) breast tumor
- ASB for transcription factors
- PRGR_HUMAN ESR1_HUMAN FOXA1_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | -1.00 | 2.07 | 2.62 | 3.01 | Concordant | |||
| ESR1_HUMAN | 0.67 | 1.49 | 2.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.23 | 1.70 | 2.39 | n/a | No Hit | |||
| GCR_HUMAN | -3.60 | 1.80 | 2.25 | 3.46 | Concordant |
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Motif analysis
