rs351293 chr5:155068844 T>C

Sequence
tctcaaaggccttgtatttgagga[T/C]ctggtaaaaatatttgcaaaccaa
ASB in cell types
T47D (invasive ductal carcinoma) A1-2 (breast cancer cells)
ASB for transcription factors
FOXA1_HUMAN PRGR_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.49 1.99 1.007.0·10-9 2.35 n/a No Hit
PRGR_HUMAN -0.84 1.48 1.002.7·10-5 2.60 n/a No Hit
GCR_HUMAN -0.41 1.86 0.866.2·10-5 2.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  longstanding arthritis,  sporadic creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Whole_Blood

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