rs352575 chr5:77776011 G>A
- Sequence
gagcggagagggacgggaagcggc[G/A]tgcgaggctggcgggctcgggcgt
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
- ASB for transcription factors
- SPT5H_HUMAN ELF1_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 2.14 | 0.63 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 2.88 | 0.21 | 1.78 | n/a | No Hit | |||
| TBX21_HUMAN | 2.10 | 0.13 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis